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PBMCs transcriptome profiles identified breed-specific transcriptome signatures for PRRSV vaccination in German Landrace and Pietrain pigs


Autoři: Md. Aminul Islam aff001;  Christiane Neuhoff aff001;  Sharmin Aqter Rony aff001;  Christine Große-Brinkhaus aff001;  Muhammad Jasim Uddin aff002;  Michael Hölker aff001;  Dawit Tesfaye aff001;  Ernst Tholen aff001;  Karl Schellander aff001;  Maren Julia Pröll-Cornelissen aff001
Působiště autorů: Department of Animal Breeding and Husbandry, Institute of Animal Science, University of Bonn, Endenicher Allee 15, Bonn, Germany aff001;  Department of Medicine, Faculty of Veterinary Science, Bangladesh Agricultural University, Mymensingh, Bangladesh aff002;  Department of Parasitology, Faculty of Veterinary Science, Bangladesh Agricultural University, Mymensingh, Bangladesh aff003;  School of Veterinary Science, The University of Queensland, Gatton campus, Brisbane, QLD, Australia aff004;  Teaching and Research Station on Frankenforst, Faculty of Agriculture, University of Bonn, Königswinter, Germany aff005
Vyšlo v časopise: PLoS ONE 14(9)
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pone.0222513

Souhrn

Porcine reproductive and respiratory syndrome (PRRS) is a devastating viral disease affecting the swine industry worldwide. Genetic variation in host immunity has been considered as one of the potential determinants to improve the immunocompetence, thereby resistance to PRRS. Therefore, the present study aimed to investigate the breed difference in innate immune response to PRRSV vaccination between German Landrace (DL) and Pietrain (Pi) pigs. We analyzed microarray-based transcriptome profiles of peripheral blood mononuclear cells (PBMCs) collected before (0 h) and 24 h after PRRSV vaccination from purebred DL and Pi pigs with three biological replicates. In total 4,269 transcripts were identified to be differentially expressed in PBMCs in at least any of four tested contrast pairs (i.e. DL-24h vs. DL-0h, Pi-24h vs. Pi-0h, DL-0h vs. Pi-0h and DL-24h vs. Pi-24h). The number of vaccine-induced differentially expressed genes (DEGs) was much higher (2,459) in DL pigs than that of Pi pigs (291). After 24 h of PRRSV vaccination, 1,046 genes were differentially expressed in PMBCs of DL pigs compared to that of Pi (DL-24h vs. Pi-24h), indicating the breed differences in vaccine responsiveness. The top biological pathways significantly affected by DEGs of both breeds were linked to immune response functions. The network enrichment analysis identified ADAM17, STAT1, MMS19, RPA2, BAD, UCHL5 and APC as potential regulatory genes for the functional network of PRRSV vaccine response specific for DL; while FOXO3, IRF2, ADRBK1, FHL3, PPP2CB and NCOA6 were found to be the most potential hubs of Pi specific transcriptome network. In conclusion, our data provided insights of breed-specific host transcriptome responses to PRRSV vaccination which might contribute in better understanding of PPRS resistance in pigs.

Klíčová slova:

Biology and life sciences – Organisms – Eukaryota – Animals – Vertebrates – Amniotes – Mammals – Swine – Vaccination and immunization – Computational biology – Genetics – Genomics – Genome analysis – Transcriptome analysis – Gene identification and analysis – Genetic networks – Gene expression – Microbiology – Virology – Virus effects on host gene expression – Medicine and health sciences – Immunology – Immune response – Public and occupational health – Preventive medicine – Infectious diseases – Infectious disease control – Vaccines – Computer and information sciences – Network analysis


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