Genetic analysis and fine mapping of a qualitative trait locus wpb1 for albino panicle branches in rice

English version

Autoři: Zhongquan Cai ^aff001; Peilong Jia ^aff002; Jiaqiang Zhang ^aff003; Ping Gan ^aff001; Qi Shao ^aff001; Gang Jin ^aff004; Liping Wang ^aff004; Jian Jin ^aff001; Jiangyi Yang ^aff001; Jijing Luo ^aff001
Působiště autorů: College of Life Science and Technology, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, China ^aff001; Institute for New Rural Development, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, Guangxi, China ^aff002; Research and Development Centre of Flower, Zhejiang Academy of Agricultural Sciences, Hangzhou, China ^aff003; Guangxi Subtropical Crops Research Institute, Nanning, China ^aff004
Vyšlo v časopise: PLoS ONE 14(9)
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pone.0223228

Souhrn

Chloroplast plays an important role in the plant life cycle. However, the details of its development remain elusive in rice. In this study, we report the fine-mapping of a novel rice gene wpb1 (white panicle branch 1), which affects chloroplast biogenesis, from a tropical japonica variety that results in an albino panicle branches at and after the heading stage. The wpb1 variety was crossed with Nipponbare to generate the F₂ and BC₁F₂ populations. Green and white panicle branch phenotypes with a 3:1 segregation ratio was observed in the F₂ population. Bulked segregant analysis (BSA) based on whole genome resequencing was conducted to determine the wpb1 locus. A candidate interval spanning from 11.35 to 23.79M (physical position) on chromosome 1 was identified. The results of BSA analysis were verified by a 40K rice SNP-array using the BC₁F₂ population. A large-scale F₂ population was used to pinpoint wpb1, and the locus was further narrowed down to a 95-kb interval. Furthermore, our results showed that the expression levels of the majority of the genes involved in Chl biosynthesis, photosynthesis and chloroplast development were remarkably affected in wpb1 variety and in F₂ plants with a white panicle branch phenotype. In line with the results mentioned above, anatomical structural examination and chlorophyll (Chl) content measurement suggested that wpb1 might play an important role in the regulation of chloroplast development. Further cloning and functional characterization of the wpb1 gene will shed light on the molecular mechanism underlying chloroplast development in rice.

Klíčová slova:

Biosynthesis – Genetic loci – Chlorophyll – Chloroplasts – Leaves – Photosynthesis – Rice – Panicles

Zdroje

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Genetic analysis and fine mapping of a qualitative trait locus wpb1 for albino panicle branches in rice

Souhrn

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