A robust multi-objective optimization framework to capture both cellular and intercellular properties in cardiac cellular model tuning: Analyzing different regions of membrane resistance profile in parameter fitting
Autoři:
Elnaz Pouranbarani aff001; Rodrigo Weber dos Santos aff002; Anders Nygren aff001
Působiště autorů:
Department of Electrical and Computer Engineering, University of Calgary, Calgary, Alberta, Canada
aff001; Department of Computer Science and the Graduate Program of Computational Modeling, Federal University of Juiz de Fora, Juiz de Fora, Minas Gerais, Brazil
aff002
Vyšlo v časopise:
PLoS ONE 14(11)
Kategorie:
Research Article
doi:
https://doi.org/10.1371/journal.pone.0225245
Souhrn
Mathematical models of cardiac cells have been established to broaden understanding of cardiac function. In the process of developing electrophysiological models for cardiac myocytes, precise parameter tuning is a crucial step. The membrane resistance (Rm) is an essential feature obtained from cardiac myocytes. This feature reflects intercellular coupling and affects important phenomena, such as conduction velocity, and early after-depolarizations, but it is often overlooked during the phase of parameter fitting. Thus, the traditional parameter fitting that only includes action potential (AP) waveform may yield incorrect values for Rm. In this paper, a novel multi-objective parameter fitting formulation is proposed and tested that includes different regions of the Rm profile as additional objective functions for optimization. As Rm depends on the transmembrane voltage (Vm) and exhibits singularities for some specific values of Vm, analyses are conducted to carefully select the regions of interest for the proper characterization of Rm. Non-dominated sorting genetic algorithm II is utilized to solve the proposed multi-objective optimization problem. To verify the efficacy of the proposed problem formulation, case studies and comparisons are carried out using multiple models of human cardiac ventricular cells. Results demonstrate Rm is correctly reproduced by the tuned cell models after considering the curve of Rm obtained from the late phase of repolarization and Rm value calculated in the rest phase as additional objectives. However, relative deterioration of the AP fit is observed, demonstrating trade-off among the objectives. This framework can be useful for a wide range of applications, including the parameters fitting phase of the cardiac cell model development and investigation of normal and pathological scenarios in which reproducing both cellular and intercellular properties are of great importance.
Klíčová slova:
Action potentials – Curve fitting – Interpolation – Mathematical models – Optimization – Peak values – Simulation and modeling
Zdroje
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Článek vyšel v časopise
PLOS One
2019 Číslo 11
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