pH-dependent activation of cytokinesis modulates Escherichia coli cell size
Autoři:
Elizabeth A. Mueller aff001; Corey S. Westfall aff001; Petra Anne Levin aff001
Působiště autorů:
Department of Biology, Washington University in St. Louis, St. Louis, Missouri, United States of America
aff001
Vyšlo v časopise:
pH-dependent activation of cytokinesis modulates Escherichia coli cell size. PLoS Genet 16(3): e32767. doi:10.1371/journal.pgen.1008685
Kategorie:
Research Article
doi:
https://doi.org/10.1371/journal.pgen.1008685
Souhrn
Cell size is a complex trait, derived from both genetic and environmental factors. Environmental determinants of bacterial cell size identified to date primarily target assembly of cytosolic components of the cell division machinery. Whether certain environmental cues also impact cell size through changes in the assembly or activity of extracytoplasmic division proteins remains an open question. Here, we identify extracellular pH as a modulator of cell division and a significant determinant of cell size across evolutionarily distant bacterial species. In the Gram-negative model organism Escherichia coli, our data indicate environmental pH impacts the length at which cells divide by altering the ability of the terminal cell division protein FtsN to localize to the cytokinetic ring where it activates division. Acidic environments lead to enrichment of FtsN at the septum and activation of division at a reduced cell length. Alkaline pH inhibits FtsN localization and suppresses division activation. Altogether, our work reveals a previously unappreciated role for pH in bacterial cell size control.
Klíčová slova:
Bacterial evolution – Cell cycle and cell division – Cell walls – Cytokinesis – Glucose – Hyperexpression techniques – Periplasm – Phase contrast microscopy
Zdroje
1. Campos M, Surovtsev IV, Kato S, Paintdakhi A, Beltran B, Ebmeier SE, et al. A constant size extension drives bacterial cell size homeostasis. Cell. 2014;159: 1433–1446. doi: 10.1016/j.cell.2014.11.022 25480302
2. Taheri-Araghi S, Bradde S, Sauls JT, Hill NS, Levin PA, Paulsson J, et al. Cell-Size Control and Homeostasis in Bacteria. Curr Biol. 2017;27: 1392. doi: 10.1016/j.cub.2017.04.028 28486111
3. Si F, Le Treut G, Sauls JT, Vadia S, Levin PA, Jun S. Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria. Curr Biol. 2019;29: 1760–1770.e7. doi: 10.1016/j.cub.2019.04.062 31104932
4. Weart RB, Lee AH, Chien A-C, Haeusser DP, Hill NS, Levin PA. A metabolic sensor governing cell size in bacteria. Cell. 2007;130: 335–347. doi: 10.1016/j.cell.2007.05.043 17662947
5. Hill NS, Buske PJ, Shi Y, Levin PA. A moonlighting enzyme links Escherichia coli cell size with central metabolism. Casadesús J, editor. PLoS Genet. 2013;9: e1003663. doi: 10.1371/journal.pgen.1003663 23935518
6. Fantes P, Nurse P. Control of cell size at division in fission yeast by a growth-modulated size control over nuclear division. Exp Cell Res. 1977;107: 377–386. doi: 10.1016/0014-4827(77)90359-7 872891
7. Bachmann BJ. Pedigrees of some mutant strains of Escherichia coli K-12. Bacteriol Rev. American Society for Microbiology (ASM); 1972;36: 525–557.
8. Casadaban MJ. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol. 1976;104: 541–555. doi: 10.1016/0022-2836(76)90119-4 781293
9. Vadia S, Tse JL, Lucena R, Yang Z, Kellogg DR, Wang JD, et al. Fatty Acid Availability Sets Cell Envelope Capacity and Dictates Microbial Cell Size. Curr Biol. 2017;27: 1757–1767.e5. doi: 10.1016/j.cub.2017.05.076 28602657
10. Billaudeau C, Chastanet A, Yao Z, Cornilleau C, Mirouze N, Fromion V, et al. Contrasting mechanisms of growth in two model rod-shaped bacteria. Nature Communications 2016 7. Nature Publishing Group; 2017;8: 15370. doi: 10.1038/ncomms15370 28589952
11. Monahan LG, Hajduk IV, Blaber SP, Charles IG, Harry EJ. Coordinating bacterial cell division with nutrient availability: a role for glycolysis. Gottesman S, editor. MBio. 3rd ed. 2014;5: e00935–14. doi: 10.1128/mBio.00935-14 24825009
12. Westfall CS, Levin PA. Comprehensive analysis of central carbon metabolism illuminates connections between nutrient availability, growth rate, and cell morphology in Escherichia coli. Søgaard-Andersen L, editor. PLoS Genet. Public Library of Science; 2018;14: e1007205. doi: 10.1371/journal.pgen.1007205 29432413
13. Aarsman MEG, Piette A, Fraipont C, Vinkenvleugel TMF, Nguyen-Distèche M, Blaauwen den T. Maturation of the Escherichia coli divisome occurs in two steps. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2005;55: 1631–1645. doi: 10.1111/j.1365-2958.2005.04502.x 15752189
14. Haeusser DP, Margolin W. Splitsville: structural and functional insights into the dynamic bacterial Z ring. Nature Reviews Microbiology 2011 10:2. Nature Publishing Group; 2016;14: 305–319. doi: 10.1038/nrmicro.2016.26 27040757
15. Slonczewski JL, Rosen BP, Alger JR, Macnab RM. pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate. Proc Natl Acad Sci USA. National Academy of Sciences; 1981;78: 6271–6275.
16. Wilks JC, Slonczewski JL. pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J Bacteriol. American Society for Microbiology; 2007;189: 5601–5607. doi: 10.1128/JB.00615-07 17545292
17. Chakraborty S, Winardhi RS, Morgan LK, Yan J, Kenney LJ. Non-canonical activation of OmpR drives acid and osmotic stress responses in single bacterial cells. Nature Communications 2016 7. Nature Publishing Group; 2017;8: 1587. doi: 10.1038/s41467-017-02030-0 29138484
18. Ishino F, Jung HK, Ikeda M, Doi M, Wachi M, Matsuhashi M. New mutations fts-36, lts-33, and ftsW clustered in the mra region of the Escherichia coli chromosome induce thermosensitive cell growth and division. J Bacteriol. American Society for Microbiology Journals; 1989;171: 5523–5530. doi: 10.1128/jb.171.10.5523-5530.1989
19. Modell JW, Kambara TK, Perchuk BS, Laub MT. A DNA damage-induced, SOS-independent checkpoint regulates cell division in Caulobacter crescentus. Michel B, editor. PLoS Biol. 2014;12: e1001977. doi: 10.1371/journal.pbio.1001977 25350732
20. Liu B, Persons L, Lee L, de Boer PAJ. Roles for both FtsA and the FtsBLQ subcomplex in FtsN-stimulated cell constriction in Escherichia coli. Mol Microbiol. Wiley/Blackwell (10.1111); 2015;95: 945–970. doi: 10.1111/mmi.12906 25496160
21. Tsang M-J, Bernhardt TG. A role for the FtsQLB complex in cytokinetic ring activation revealed by an ftsL allele that accelerates division. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2015;95: 925–944. doi: 10.1111/mmi.12905 25496050
22. Lambert A, Vanhecke A, Archetti A, Holden S, Schaber F, Pincus Z, et al. Constriction Rate Modulation Can Drive Cell Size Control and Homeostasis in C. crescentus. iScience. 2018;4: 180–189. doi: 10.1016/j.isci.2018.05.020 30240739
23. Bilobrov VM, Chugaj AV, Bessarabov VI. Urine pH variation dynamics in healthy individuals and stone formers. Urol Int. Karger Publishers; 1990;45: 326–331. doi: 10.1159/000281730 2288048
24. Watson BW, Meldrum SJ, Riddle HC, Brown RL, Sladen GE. pH profile of gut as measured by radiotelemetry capsule. Br Med J. BMJ Publishing Group; 1972;2: 104–106.
25. Perez AJ, Cesbron Y, Shaw SL, Bazan Villicana J, Tsui H-CT, Boersma MJ, et al. Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae. Proc Natl Acad Sci USA. 2019;116: 3211–3220. doi: 10.1073/pnas.1816018116 30718427
26. Heinrich K, Leslie DJ, Morlock M, Bertilsson S, Jonas K. Molecular Basis and Ecological Relevance of Caulobacter Cell Filamentation in Freshwater Habitats. Justice S, editor. MBio. American Society for Microbiology; 2019;10: 162. doi: 10.1128/mBio.01557-19 31431551
27. Hale CA, de Boer PA. Direct binding of FtsZ to ZipA, an essential component of the septal ring structure that mediates cell division in E. coli. Cell. 1997;88: 175–185. doi: 10.1016/s0092-8674(00)81838-3 9008158
28. Coltharp C, Buss J, Plumer TM, Xiao J. Defining the rate-limiting processes of bacterial cytokinesis. Proc Natl Acad Sci USA. National Academy of Sciences; 2016;113: E1044–53. doi: 10.1073/pnas.1514296113 26831086
29. Yang X, Lyu Z, Miguel A, McQuillen R, Huang KC, Xiao J. GTPase activity-coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell wall synthesis. Science. 2017;355: 744–747. doi: 10.1126/science.aak9995 28209899
30. Liu G, Draper GC, Donachie WD. FtsK is a bifunctional protein involved in cell division and chromosome localization in Escherichia coli. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 1998;29: 893–903. doi: 10.1046/j.1365-2958.1998.00986.x 9723927
31. Chen JC, Beckwith J. FtsQ, FtsL and FtsI require FtsK, but not FtsN, for co-localization with FtsZ during Escherichia coli cell division. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2001;42: 395–413. doi: 10.1046/j.1365-2958.2001.02640.x 11703663
32. Guzman LM, Weiss DS, Beckwith J. Domain-swapping analysis of FtsI, FtsL, and FtsQ, bitopic membrane proteins essential for cell division in Escherichia coli. J Bacteriol. American Society for Microbiology Journals; 1997;179: 5094–5103. doi: 10.1128/jb.179.16.5094-5103.1997
33. Taguchi A, Welsh MA, Marmont LS, Lee W, Sjodt M, Kruse AC, et al. FtsW is a peptidoglycan polymerase that is functional only in complex with its cognate penicillin-binding protein. Nat Microbiol. Nature Publishing Group; 2019;2: a000414. doi: 10.1038/s41564-018-0345-x 30692671
34. Addinall SG, Cao C, Lutkenhaus J. FtsN, a late recruit to the septum in Escherichia coli. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 1997;25: 303–309. doi: 10.1046/j.1365-2958.1997.4641833.x 9282742
35. Gerding MA, Liu B, Bendezú FO, Hale CA, Bernhardt TG, de Boer PAJ. Self-enhanced accumulation of FtsN at Division Sites and Roles for Other Proteins with a SPOR domain (DamX, DedD, and RlpA) in Escherichia coli cell constriction. J Bacteriol. American Society for Microbiology Journals; 2009;191: 7383–7401. doi: 10.1128/JB.00811-09 19684127
36. Du S, Pichoff S, Lutkenhaus J. FtsEX acts on FtsA to regulate divisome assembly and activity. Proc Natl Acad Sci USA. 2016;113: E5052–61. doi: 10.1073/pnas.1606656113 27503875
37. Durand-Heredia JM, Yu HH, De Carlo S, Lesser CF, Janakiraman A. Identification and characterization of ZapC, a stabilizer of the FtsZ ring in Escherichia coli. J Bacteriol. American Society for Microbiology Journals; 2011;193: 1405–1413. doi: 10.1128/JB.01258-10 21216995
38. Hale CA, Shiomi D, Liu B, Bernhardt TG, Margolin W, Niki H, et al. Identification of Escherichia coli ZapC (YcbW) as a component of the division apparatus that binds and bundles FtsZ polymers. J Bacteriol. American Society for Microbiology Journals; 2011;193: 1393–1404. doi: 10.1128/JB.01245-10 21216997
39. Durand-Heredia J, Rivkin E, Fan G, Morales J, Janakiraman A. Identification of ZapD as a cell division factor that promotes the assembly of FtsZ in Escherichia coli. J Bacteriol. American Society for Microbiology Journals; 2012;194: 3189–3198. doi: 10.1128/JB.00176-12 22505682
40. Samaluru H, SaiSree L, Reddy M. Role of SufI (FtsP) in cell division of Escherichia coli: evidence for its involvement in stabilizing the assembly of the divisome. J Bacteriol. 2007;189: 8044–8052. doi: 10.1128/JB.00773-07 17766410
41. Bertsche U, Kast T, Wolf B, Fraipont C, Aarsman MEG, Kannenberg K, et al. Interaction between two murein (peptidoglycan) synthases, PBP3 and PBP1B, in Escherichia coli. Mol Microbiol. Wiley/Blackwell (10.1111); 2006;61: 675–690. doi: 10.1111/j.1365-2958.2006.05280.x 16803586
42. Banzhaf M, van den Berg van Saparoea B, Terrak M, Fraipont C, Egan A, Philippe J, et al. Cooperativity of peptidoglycan synthases active in bacterial cell elongation. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2012;85: 179–194. doi: 10.1111/j.1365-2958.2012.08103.x 22606933
43. Bernhardt TG, de Boer PAJ. The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport pathway. Mol Microbiol. NIH Public Access; 2003;48: 1171–1182.
44. Schmidt KL, Peterson ND, Kustusch RJ, Wissel MC, Graham B, Phillips GJ, et al. A predicted ABC transporter, FtsEX, is needed for cell division in Escherichia coli. J Bacteriol. 2004;186: 785–793. doi: 10.1128/JB.186.3.785-793.2004 14729705
45. Du S, Pichoff S, Lutkenhaus J. FtsEX acts on FtsA to regulate divisome assembly and activity. Proc Natl Acad Sci USA. National Academy of Sciences; 2016;113: E5052–61. doi: 10.1073/pnas.1606656113 27503875
46. Mueller EA, Egan AJ, Breukink E, Vollmer W, Levin PA. Plasticity of Escherichia coli cell wall metabolism promotes fitness and antibiotic resistance across environmental conditions. eLife. eLife Sciences Publications Limited; 2019;8: 492. doi: 10.7554/eLife.40754 30963998
47. Ricard M, Hirota Y. Process of cellular division in Escherichia coli: physiological study on thermosensitive mutants defective in cell division. J Bacteriol. American Society for Microbiology (ASM); 1973;116: 314–322.
48. Dai K, Xu Y, Lutkenhaus J. Cloning and characterization of ftsN, an essential cell division gene in Escherichia coli isolated as a multicopy suppressor of ftsA12(Ts). J Bacteriol. 1993;175: 3790–3797. doi: 10.1128/jb.175.12.3790-3797.1993 8509333
49. Broome-Smith JK, Hedge PJ, Spratt BG. Production of thiol-penicillin-binding protein 3 of Escherichia coli using a two primer method of site-directed mutagenesis. EMBO J. European Molecular Biology Organization; 1985;4: 231–235.
50. Vischer NOE, Verheul J, Postma M, van den Berg van Saparoea B, Galli E, Natale P, et al. Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ. Front Microbiol. Frontiers; 2015;6: 586. doi: 10.3389/fmicb.2015.00586 26124755
51. Pichoff S, Du S, Lutkenhaus J. The bypass of ZipA by overexpression of FtsN requires a previously unknown conserved FtsN motif essential for FtsA-FtsN interaction supporting a model in which FtsA monomers recruit late cell division proteins to the Z ring. Mol Microbiol. Wiley/Blackwell (10.1111); 2015;95: 971–987. doi: 10.1111/mmi.12907 25496259
52. Busiek KK, Eraso JM, Wang Y, Margolin W. The early divisome protein FtsA interacts directly through its 1c subdomain with the cytoplasmic domain of the late divisome protein FtsN. J Bacteriol. 2012;194: 1989–2000. doi: 10.1128/JB.06683-11 22328664
53. Yahashiri A, Jorgenson MA, Weiss DS. Bacterial SPOR domains are recruited to septal peptidoglycan by binding to glycan strands that lack stem peptides. Proc Natl Acad Sci USA. 2015;112: 11347–11352. doi: 10.1073/pnas.1508536112 26305949
54. Pichoff S, Du S, Lutkenhaus J. Disruption of divisome assembly rescued by FtsN-FtsA interaction in Escherichia coli. Proc Natl Acad Sci USA. National Academy of Sciences; 2018;180: 201806450. doi: 10.1073/pnas.1806450115 29967164
55. Stoddard A, Rolland V. I see the light! Fluorescent proteins suitable for cell wall/apoplast targeting in Nicotiana benthamiana leaves. Plant Direct. 2019;3: e00112. doi: 10.1002/pld3.112 31245754
56. Baranova N, Radler P, Hernández-Rocamora VM, Alfonso C, López-Pelegrín M, Rivas G, et al. Diffusion and capture permits dynamic coupling between treadmilling FtsZ filaments and cell division proteins. Nat Microbiol. Nature Publishing Group; 2020;16: 38–11. doi: 10.1038/s41564-019-0657-5 31959972
57. Sekar K, Rusconi R, Sauls JT, Fuhrer T, Noor E, Nguyen J, et al. Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria. Molecular Systems Biology. John Wiley & Sons, Ltd; 2018;14: e8623. doi: 10.15252/msb.20188623 30397005
58. Geissler B, Shiomi D, Margolin W. The ftsA* gain-of-function allele of Escherichia coli and its effects on the stability and dynamics of the Z ring. Microbiology (Reading, Engl). Microbiology Society; 2007;153: 814–825. doi: 10.1099/mic.0.2006/001834-0 17322202
59. Krupka M, Rowlett VW, Morado D, Vitrac H, Schoenemann K, Liu J, et al. Escherichia coli FtsA forms lipid-bound minirings that antagonize lateral interactions between FtsZ protofilaments. Nature Communications 2016 7. Nature Publishing Group; 2017;8: 305–12. doi: 10.1038/ncomms15957 28695917
60. Bernard CS, Sadasivam M, Shiomi D, Margolin W. An altered FtsA can compensate for the loss of essential cell division protein FtsN in Escherichia coli. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2007;64: 1289–1305. doi: 10.1111/j.1365-2958.2007.05738.x 17542921
61. SCHAECHTER M, MAALOE O, KJELDGAARD NO. Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium. J Gen Microbiol. Microbiology Society; 1958;19: 592–606. doi: 10.1099/00221287-19-3-592 13611202
62. Ursell T, Lee TK, Shiomi D, Shi H, Tropini C, Monds RD, et al. Rapid, precise quantification of bacterial cellular dimensions across a genomic-scale knockout library. BMC Biol. BioMed Central; 2017;15: 17–15. doi: 10.1186/s12915-017-0348-8 28222723
63. Campos M, Govers SK, Irnov I, Dobihal GS, Cornet F, Jacobs-Wagner C. Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in Escherichia coli. Molecular Systems Biology. John Wiley & Sons, Ltd; 2018;14: e7573. doi: 10.15252/msb.20177573 29941428
64. Boes A, Olatunji S, Breukink E, Terrak M. Regulation of the Peptidoglycan Polymerase Activity of PBP1b by Antagonist Actions of the Core Divisome Proteins FtsBLQ and FtsN. den Blaauwen T, Salama NR, editors. MBio. 2019;10: 220. doi: 10.1128/mBio.01912-18 30622193
65. Draper GC, McLennan N, Begg K, Masters M, Donachie WD. Only the N-terminal domain of FtsK functions in cell division. J Bacteriol. American Society for Microbiology (ASM); 1998;180: 4621–4627.
66. Goehring NW, Robichon C, Beckwith J. Role for the nonessential N terminus of FtsN in divisome assembly. J Bacteriol. American Society for Microbiology Journals; 2007;189: 646–649. doi: 10.1128/JB.00992-06 17071748
67. Peters NT, Dinh T, Bernhardt TG. A Fail-Safe Mechanism in the Septal Ring Assembly Pathway Generated by the Sequential Recruitment of Cell Separation Amidases and Their Activators. J Bacteriol. American Society for Microbiology Journals; 2011;193: 4973–4983. doi: 10.1128/JB.00316-11 21764913
68. Goehring NW, Gueiros-Filho F, Beckwith J. Premature targeting of a cell division protein to midcell allows dissection of divisome assembly in Escherichia coli. Genes Dev. 2005;19: 127–137. doi: 10.1101/gad.1253805 15630023
69. Corbin BD, Geissler B, Sadasivam M, Margolin W. Z-ring-independent interaction between a subdomain of FtsA and late septation proteins as revealed by a polar recruitment assay. J Bacteriol. 2004;186: 7736–7744. doi: 10.1128/JB.186.22.7736-7744.2004 15516588
70. Daley DO, Skoglund U, Söderström B. FtsZ does not initiate membrane constriction at the onset of division. Sci Rep. Nature Publishing Group; 2016;6: 33138. doi: 10.1038/srep33138 27609565
71. Wissel MC, Weiss DS. Genetic analysis of the cell division protein FtsI (PBP3): amino acid substitutions that impair septal localization of FtsI and recruitment of FtsN. J Bacteriol. American Society for Microbiology Journals; 2004;186: 490–502. doi: 10.1128/jb.186.2.490-502.2004
72. Busiek KK, Margolin W. A role for FtsA in SPOR-independent localization of the essential Escherichia coli cell division protein FtsN. Mol Microbiol. John Wiley & Sons, Ltd (10.1111); 2014;92: 1212–1226. doi: 10.1111/mmi.12623 24750258
73. Yang X, McQuillen R, Lyu Z, Phillips-Mason P, La Cruz De A, McCausland JW, et al. FtsW exhibits distinct processive movements driven by either septal cell wall synthesis or FtsZ treadmilling in E. coli. bioRxiv. Cold Spring Harbor Laboratory; 2019;1: 850073. doi: 10.1101/850073
74. Müller P, Ewers C, Bertsche U, Anstett M, Kallis T, Breukink E, et al. The essential cell division protein FtsN interacts with the murein (peptidoglycan) synthase PBP1B in Escherichia coli. J Biol Chem. 2007;282: 36394–36402. doi: 10.1074/jbc.M706390200 17938168
75. Pazos M, Peters K, Casanova M, Palacios P, VanNieuwenhze M, Breukink E, et al. Z-ring membrane anchors associate with cell wall synthases to initiate bacterial cell division. Nature Communications 2016 7. Nature Publishing Group; 2018;9: 5090–12. doi: 10.1038/s41467-018-07559-2 30504892
76. Cho H, Wivagg CN, Kapoor M, Barry Z, Rohs PDA, Suh H, et al. Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously. Nat Microbiol. 2016;1: 16172–33. doi: 10.1038/nmicrobiol.2016.172 27643381
77. Morè N, Martorana AM, Biboy J, Otten C, Winkle M, Serrano CKG, et al. Peptidoglycan Remodeling Enables Escherichia coli To Survive Severe Outer Membrane Assembly Defect. Kline KA, editor. MBio. 2019;10: a000414. doi: 10.1128/mBio.02729-18 30723128
78. Vigouroux A, Cordier B, Aristov A, Oldewurtel E, Özbaykal G, Chaze T, et al. Cell-wall synthases contribute to bacterial cell-envelope integrity by actively repairing defects. bioRxiv. Cold Spring Harbor Laboratory; 2019;98: 763508. doi: 10.1101/763508
79. van Straaten KE, Dijkstra BW, Vollmer W, Thunnissen A-MWH. Crystal structure of MltA from Escherichia coli reveals a unique lytic transglycosylase fold. J Mol Biol. 2005;352: 1068–1080. doi: 10.1016/j.jmb.2005.07.067 16139297
80. Peters K, Kannan S, Rao VA, Biboy J, Vollmer D, Erickson SW, et al. The Redundancy of Peptidoglycan Carboxypeptidases Ensures Robust Cell Shape Maintenance in Escherichia coli. MBio. 2016;7: e00819–16. doi: 10.1128/mBio.00819-16 27329754
81. Castanheira S, Cestero JJ, Rico-Pérez G, García P, Cava F, Ayala JA, et al. A Specialized Peptidoglycan Synthase PromotesSalmonellaCell Division inside Host Cells. Sansonetti PJ, editor. MBio. American Society for Microbiology; 2017;8: e01685–17. doi: 10.1128/mBio.01685-17 29259085
82. Meiresonne NY, Consoli E, Mertens LMY, Chertkova AO, Goedhart J, Blaauwen den T. Superfolder mTurquoise2ox optimized for the bacterial periplasm allows high efficiency in vivo FRET of cell division antibiotic targets. Mol Microbiol. 2019;111: 1025–1038. doi: 10.1111/mmi.14206 30648295
83. Weart RB, Levin PA. Growth rate-dependent regulation of medial FtsZ ring formation. J Bacteriol. 2003;185: 2826–2834. doi: 10.1128/JB.185.9.2826-2834.2003 12700262
84. Modell JW, Hopkins AC, Laub MT. A DNA damage checkpoint in Caulobacter crescentus inhibits cell division through a direct interaction with FtsW. Genes Dev. Cold Spring Harbor Lab; 2011;25: 1328–1343. doi: 10.1101/gad.2038911 21685367
85. Geissler B, Elraheb D, Margolin W. A gain-of-function mutation in ftsA bypasses the requirement for the essential cell division gene zipA in Escherichia coli. Proceedings of the National Academy of Sciences. 2003;100: 4197–4202. doi: 10.1073/pnas.0635003100 12634424
86. Pazos M, Peters K, Vollmer W. Robust peptidoglycan growth by dynamic and variable multi-protein complexes. Curr Opin Microbiol. 2017;36: 55–61. doi: 10.1016/j.mib.2017.01.006 28214390
87. Reddy M. Role of FtsEX in cell division of Escherichia coli: viability of ftsEX mutants is dependent on functional SufI or high osmotic strength. J Bacteriol. American Society for Microbiology Journals; 2007;189: 98–108. doi: 10.1128/JB.01347-06 17071757
88. Dai X, Zhu M. High Osmolarity Modulates Bacterial Cell Size through Reducing Initiation Volume in Escherichia coli. Bowman GR, editor. mSphere. American Society for Microbiology Journals; 2018;3: R340. doi: 10.1128/mSphere.00430-18 30355666
89. Peters K, Pazos M, Edoo Z, Hugonnet J-E, Martorana AM, Polissi A, et al. Copper inhibits peptidoglycan LD-transpeptidases suppressing β-lactam resistance due to bypass of penicillin-binding proteins. Proc Natl Acad Sci USA. 2018;115: 10786–10791. doi: 10.1073/pnas.1809285115 30275297
90. Murphy SG, Alvarez L, Adams MC, Liu S, Chappie JS, Cava F, et al. Endopeptidase Regulation as a Novel Function of the Zur-Dependent Zinc Starvation Response. Salama NR, editor. MBio. 2019;10: 161. doi: 10.1128/mBio.02620-18 30782657
91. Lonergan ZR, Nairn BL, Wang J, Hsu Y-P, Hesse LE, Beavers WN, et al. An Acinetobacter baumannii, Zinc-Regulated Peptidase Maintains Cell Wall Integrity during Immune-Mediated Nutrient Sequestration. Cell Rep. 2019;26: 2009–2018.e6. doi: 10.1016/j.celrep.2019.01.089 30784584
92. Stylianidou S, Brennan C, Nissen SB, Kuwada NJ, Wiggins PA. SuperSegger: robust image segmentation, analysis and lineage tracking of bacterial cells. Mol Microbiol. Wiley/Blackwell (10.1111); 2016;102: 690–700. doi: 10.1111/mmi.13486 27569113
93. Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, et al. Fiji: an open-source platform for biological-image analysis. Nat Methods. Nature Publishing Group; 2012;9: 676–682. doi: 10.1038/nmeth.2019 22743772
Článek vyšel v časopise
PLOS Genetics
2020 Číslo 3
- S diagnostikou Parkinsonovy nemoci může nově pomoci AI nástroj pro hodnocení mrkacího reflexu
- Proč při poslechu některé muziky prostě musíme tančit?
- Chůze do schodů pomáhá prodloužit život a vyhnout se srdečním chorobám
- Metamizol jako analgetikum první volby: kdy, pro koho, jak a proč?
- „Jednohubky“ z klinického výzkumu – 2024/44
Nejčtenější v tomto čísle
- Evidence of defined temporal expression patterns that lead a gram-negative cell out of dormancy
- The Lid/KDM5 histone demethylase complex activates a critical effector of the oocyte-to-zygote transition
- The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
- Modeling cancer genomic data in yeast reveals selection against ATM function during tumorigenesis