The ninth life of the cat reference genome, Felis_catus
Autoři:
Wengang Zhang aff001; Jeffrey J. Schoenebeck aff001
Působiště autorů:
The Roslin Institute and Royal (Dick) School for Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, United Kingdom
aff001
Vyšlo v časopise:
The ninth life of the cat reference genome, Felis_catus. PLoS Genet 16(10): e32767. doi:10.1371/journal.pgen.1009045
Kategorie:
Perspective
doi:
https://doi.org/10.1371/journal.pgen.1009045
Zdroje
1. Vigne JD, Guilaine J, Debue K, Haye L, Gerard P. Early taming of the cat in Cyprus. Science. 2004;304:259. doi: 10.1126/science.1095335 15073370
2. Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, et al. The Near Eastern origin of cat domestication. Science. 2007;317:519–523. doi: 10.1126/science.1139518 17600185
3. Ottoni C, Van Neer W, De Cupere B, Daligault J, Guimaraes S, Peters J, et al. The palaeogenetics of cat dispersal in the ancient world. Nat Ecol Evol. 2017;1:103–107. doi: 10.1038/s41559-017-0103 28812674
4. Clutton-Brock J. A natural history of domesticated mammals. 2nd ed. Cambridge; 1999.
5. Buckley RM, Davis BW, Brashear WA, Farias FHG, Kuroki K, Graves T, et al. A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. PLoS Genet. 2020;16:e1008926. doi: 10.1371/journal.pgen.1008926
6. Alhaddad H, Khan R, Grahn RA, Gandolfi B, Mullikin JC, Cole SA, et al. Extent of linkage disequilibrium in the domestic cat, Felis silvestris catus, and its breeds. Ellegren H, editor. PLoS ONE. 2013;8:e53537. doi: 10.1371/journal.pone.0053537 23308248
7. Lipinski MJ, Froenicke L, Baysac KC, Billings NC, Leutenegger CM, Levy AM, et al. The ascent of cat breeds: genetic evaluations of breeds and worldwide random-bred populations. Genomics. 2008;91:12–21. doi: 10.1016/j.ygeno.2007.10.009 18060738
8. Pontius JU, Mullikin JC, Smith DR, Agencourt Sequencing Team, Lindblad-Toh K, Gnerre S, et al. Initial sequence and comparative analysis of the cat genome. Genome Res. 2007;17:1675–1689. doi: 10.1101/gr.6380007 17975172
9. Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SMJ, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proc Natl Acad Sci U S A. 2014;111:17230–17235. doi: 10.1073/pnas.1410083111 25385592
10. Davis BW, Raudsepp T, Pearks Wilkerson AJ, Agarwala R, Schäffer AA, Houck M, et al. A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae. Genomics. 2009;93:299–304. doi: 10.1016/j.ygeno.2008.09.010 18951970
11. Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, et al. Annotated features of domestic cat—Felis catus genome. Gigascience. 2014;3:13. doi: 10.1186/2047-217X-3-13 25143822
12. Li G, Hillier LW, Grahn RA, Zimin AV, David VA, Menotti-Raymond M, et al. A high-resolution SNP array-based linkage map anchors a new domestic cat draft genome assembly and provides detailed patterns of recombination. G3 (Bethesda). 2016;6:1607–1616. doi: 10.1534/g3.116.028746 27172201
13. Lyons LA, Fox DB, Chesney KL, Britt LG, Buckley RM, Coates JR, et al. Localization of a feline autosomal dominant dwarfism locus: a novel model of chondrodysplasia. bioRxiv. 2019;48:687210. doi: 10.1101/687210
14. Li G, Davis B, Raudsepp T, Pearks Wilkerson A, Mason V, Ferguson-Smith M, et al. Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution. Genome Res. 2013;23:1486–1495. doi: 10.1101/gr.154286.112 23788650
15. Brashear WA, Raudsepp T, Murphy WJ. Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation. Genome Res. 2018;28:1841–1851. doi: 10.1101/gr.237586.118 30381290
16. Isobe S, Matsumoto Y, Chung C, Sakamoto M, Chan T-F, Hirakawa H, et al. AnAms1.0: a high-quality chromosome-scale assembly of a domestic cat Felis catus of American Shorthair breed. bioRxiv. 2020;138:2020.05.19.103788. doi: 10.1101/2020.05.19.103788
Článek vyšel v časopise
PLOS Genetics
2020 Číslo 10
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